auto_process_ngs.qc.rseqc

class auto_process_ngs.qc.rseqc.InferExperiment(infer_experiment_log)

Wrapper class for handling outputs from infer_experiment.py

The InferExperiment object gives access to various aspects of the outputs of the RSeQC infer_experiment.py utility.

The following properties are available:

  • log_file (str): path to the source log file

  • paired_end (bool): True if data are paired, False if data are single end

  • forward (float): fraction of ‘forward’ aligned reads

  • reverse (float): fraction of ‘reverse’ aligned reads

  • unstranded (float): fraction of aligned reads neither ‘forward’ nor ‘reverse’

property forward

Fraction of ‘forward’ aligned reads

property log_file

Path to source log file

property paired_end

True if data are paired end, False if single end

property reverse

Fraction of ‘reverse’ aligned reads

property unstranded

Fraction of aligned reads neither ‘forward’ nor ‘reverse’