auto_process_ngs.qc.rseqc
- class auto_process_ngs.qc.rseqc.InferExperiment(infer_experiment_log)
Wrapper class for handling outputs from infer_experiment.py
The
InferExperiment
object gives access to various aspects of the outputs of the RSeQCinfer_experiment.py
utility.The following properties are available:
log_file (str): path to the source log file
paired_end (bool): True if data are paired, False if data are single end
forward (float): fraction of ‘forward’ aligned reads
reverse (float): fraction of ‘reverse’ aligned reads
unstranded (float): fraction of aligned reads neither ‘forward’ nor ‘reverse’
- property forward
Fraction of ‘forward’ aligned reads
- property log_file
Path to source log file
- property paired_end
True if data are paired end, False if single end
- property reverse
Fraction of ‘reverse’ aligned reads
- property unstranded
Fraction of aligned reads neither ‘forward’ nor ‘reverse’