auto_process_ngs.commands.import_project_cmd
- auto_process_ngs.commands.import_project_cmd.import_project(ap, project_dir, comment=None, runner=None)
Import a project directory into an analysis directory
Importing a project directory consists of the following actions:
Copying the project directory and contents to the analysis directory
Updating ‘projects.info’ to add in the data about the imported project
Updating the project metadata and the QC report
Optionally the comments associated with the project can also be extended.
- Parameters:
ap (AutoProcessor) – autoprocessor pointing to the parent analysis directory
project_dir (str) – path to project directory to be imported
comment (str) – optional comment to append to the comments stored with the project after import
runner (JobRunner) – explicitly specify the job runner to send jobs to (overrides default runner set in the configuration)