auto_process_ngs.qc.modules.cellranger_atac_count

Implements the ‘cellranger-atac_count’ QC module:

  • CellrangerAtacCount: core QCModule class

Currently only the ‘verify’ method of the ‘CellrangerAtacCount’ class is implemented here; the remainder of the methods are implicitly delegated to the base ‘CellrangerCount’ class.

class auto_process_ngs.qc.modules.cellranger_atac_count.CellrangerAtacCount

Class for handling the ‘cellranger-atac_count’ QC module

classmethod verify(params, qc_outputs)

Verify ‘cellranger-atac_count’ QC module against outputs

Returns one of 3 values:

  • True: outputs verified ok

  • False: outputs failed to verify

  • None: verification not possible

Parameters:

  • params (AttributeDictionary) – values of parameters used as inputs

  • qc_outputs (AttributeDictionary) – QC outputs returned from the ‘collect_qc_outputs’ method